PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10033872
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family LBD
Protein Properties Length: 241aa    MW: 26017 Da    PI: 6.8425
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10033872genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.42.4e-38201201100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +C aCk+lrrkCa+dC++apyf++eq p +fa++hk+FGasnv+kll +lp ++r +a+ ++++eA+ar+rdPv+G+v++i++lq+q++ l+a+l +l
  Lus10033872  20 PCGACKFLRRKCAADCIFAPYFCSEQgPTRFAAIHKVFGASNVSKLLLHLPASDRCEAVVTIAFEAQARLRDPVHGCVSHIFSLQHQVAYLQAQLMQL 117
                  7*************************99*******************************************************************999 PP

       DUF260  98 kee 100
                  k++
  Lus10033872 118 KSQ 120
                  887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.04619121IPR004883Lateral organ boundaries, LOB
PfamPF031956.1E-3720118IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MASSSGNSPI TTSSGGTGSP CGACKFLRRK CAADCIFAPY FCSEQGPTRF AAIHKVFGAS  60
NVSKLLLHLP ASDRCEAVVT IAFEAQARLR DPVHGCVSHI FSLQHQVAYL QAQLMQLKSQ  120
MAAQNGNDNT NTAPWVGWRE ANYSHPTPYN NNCYNFNPPS PEGSPESVEY GGGVSGATAD  180
HLLQEMMITC REEASMLEQQ QNYSSSSSYG QSTSTKKRAY DSVEFGDLQA LALRMMGTYN  240
*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00309DAPTransfer from AT2G42430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012488224.13e-78PREDICTED: LOB domain-containing protein 16-like
SwissprotQ9SLB76e-69LBD16_ARATH; LOB domain-containing protein 16
TrEMBLA0A0D2P8Y04e-78A0A0D2P8Y0_G
STRINGPOPTR_0002s04210.12e-73(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45093358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.16e-60lateral organ boundaries-domain 16